Tools and resources

This is not an exhausitve list, but will try to capture any tools, libraries or databases that are mentioned during meetings.

Environments

Jupyter Notebook (formerly IPython notebook) – Open source shareable notebooks with interactive data and scientific computing.

PyCharm – Cross-platform Python IDE (Community and Pro editions).

Cheminformatics

RDKit – Open source Python/C++ cheminformatics library

Scikit-learn – Open source python tools for machine learning and data analysis

Databases

Cambridge Structural Database – 800,000+ molecular crystal structures. Online access at webcsd.ccdc.cam.ac.uk. University of Oxford has site-licence for tools including Python API, Mogul, Gold, Hermes. Distributed to contributing departments – contact richard.cooper@chem.ox.ac.uk for download details.